Many note-taking apps use Markdown, a plain text-based syntax for formatting documents. Markdown files are saved with a .md extension.
Zotero is a citation manager, not primarily a note-taking app. However, it does include a number of note-taking features that may be sufficient for some users:
Students and academics can quickly become overwhelmed by all their notes. Note-taking apps allow you to organise, sort, tag and link notes, search within them, make connections between notes and sometimes visualise them in graphs, discover new connections and gaps. In a sense, they should allow you to "think".
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To avoid procrastination. Some note-taking apps include these techniques in their task manager features: